Data files are available as tab-delimited .txt files which can be imported into a spreadsheet program or database. For ease of downloading, multi-file data sets are also available as a single compressed .tar.gz file.

NOTE: all coordinates contained within these files refer to the UCSC hg17 build and use the UCSC "half-open zero-based" convention. You can think of this as meaning that all start (low) coordinates are 0-based and all end (high) coordinates are 1-based.

Models are also viewable as a track on the UCSC Genome Browser; follow the @UCSC link to the left.

Available data sets for models (one row per model, loci with multiple alternative models are represented by multiple rows):

• All model data: all models including genes and pseudogenes
• Gene model data: gene-only subset of all models (i.e., excludes pseudogenes)
• Pseudogene model data: pseudogene-only subset of all models (i.e., excludes genes)
• K/S-kruppel gene model data: All KRAB/SCAN-kruppel gene models
• K/S-kruppel cluster model data: All KRAB/SCAN-kruppel gene models PLUS non-K/S-kruppel gene models found within clusters containing K/S-kruppel genes
• Key for model data columns: Description of data found within above model files
• All KRAB/SCAN representative gene models: These are the 423 KZNF genes described in Huntley, et al. 2006

Available data sets related to HMMER-based motif identification:

• Raw HMMER search results by chromosome:  one file per chromosome
• Raw HMMER search results by motif:  one file per motif
• HMMER matrices: used by HMMER for motif searches
• UCSC track in .BED format: file containg HMMER search results in a format that can be loaded onto UCSC site as a track; or click here to have file automatically loaded